Cytoscape

workshop details

Instructor: 

Dr. Hadar Benyamini,

Bioinformatics unit, The Hebrew University and Hadassa 

 

Workshop date and time:
Wednesday, 25/4/2018 10:15-13:00

 

Number of Participants: up to 30 people.

 

Location: PC Classroom 09,
Sherman Building,
Tel Aviv University.

 

Campus map

 

To register, please fill the registration form.

Abstract

 

Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. It is simple to download and use, and it has numerous applications (or plugins) which are freely available (Cytoscape App Store).

The workshop will include:

(i) a general introduction to biological networks and Cytoscape concepts 

(ii) a hands-on session for data import and demonstration of a few Cytoscape apps.

No previous cytoscape knowledge or computational background  is expected.

 

Files for the practical part:

Presentation

Hands-on

cvas_symbols

cvas_uniprot

pkd

pkd_symbols

pkd_uniprot

subnetwork_PKD_unfiltered

spinalcord_list

 

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