EXPANDER - Gene Expression Analysis
Instructor:
Tom Hait, School of computer science,
Faculty of exact sciences, Tel Aviv university
Workshop date and time:
Wednesday, 27/5/2020, 10:15-13:00
Location:
PC Classroom 09, Sherman Building, Tel Aviv University.
Abstract
EXPANDER is a “one-stop shop” tool for analyzing microarray and NGS data. It allows full analysis of gene-expression profiles within a single tool. It comes with up-to-date data for 18 species, and more can be added as needed. It allows normalization and filtering, clustering and biclustering, and high-level analysis of functional enrichment and cis-regulatory elements. The tool’s integrated analysis capabilities and built-in support for multiple organisms make it unique among the many other tools available for microarray data analysis. The latest version (V8) will be presented. The tutorial will show how to use EXPANDER for an end-to-end analysis of expression data and their integrated analysis with matched ChIP-Seq data.
Workshop materials: http://acgt.cs.tau.ac.il/expander/handson.html
