Selected Publications

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Selected Publications

 

Prof. Eran Bachrach & Prof. Irit Gat-Viks

  • "The host transcriptional response to superinfection by influenza A virus and Streptococcus pneumoniae" - Read Article >>
Dr. Daniel Benhalevy
  • "Epigenetic repression of antiviral genes by SARS-CoV-2 NSP1" - Read Article >>
  • "Loss of Lamin A leads to the nuclear translocation of AGO2 and compromised RNA interference" - Read Article >> 

  • "GTPBP8 plays a role in mitoribosome formation in human mitochondria" - Read Article >>
Prof. Itai Benhar

  • "Using Combination therapy to overcome diverse challenges of Immune Checkpoint Inhibitors treatment" - Read Article >>
Prof. Judith Berman
  • "Natural proteome diversity links aneuploidy tolerance to protein turnover" - Read Article >>

  • "Collateral sensitivity counteracts the evolution of antifungal drug resistance in Candida auris" - Read Article >>
  • "Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus" - Read Article >>
  • "Strain background of Candida albicans interacts with SIR2 to alter phenotypic switching" - Read Article >>
  • "Step-wise evolution of azole resistance through copy number variation followed by KSR1 loss of heterozygosity in Candida albicans" - Read Article >>
  • "Metabolic sensing tips the balance of drug tolerance in fungal meningitis" - 
    Read Article >>
Dr. David Burstein

  • "GeNLP: a web tool for NLP-based exploration and prediction of microbial gene function" - Read Article >>
  • "WarA, a remote homolog of NpmA and KamB from Nocardia wallacei, confers broad spectrum aminoglycoside resistance in Nocardia and Mycobacteria" - Read Article >>
Dr. David Burstein & Prof. Adi Stern
  • "Using big sequencing data to identify chronic SARS-Coronavirus-2 infections" - 
    Read Article >>
Prof. Avigdor Eldar
  • "Arbitrium communication controls phage lysogeny through non-lethal modulation of a host toxin-antitoxin defence system" - Read Article >>
Prof. Ehud Gazit
  • "Chapter Eight - Characterization of amyloid-like metal-amino acid assemblies with remarkable catalytic activity" - Read Article >>
  • "High Quantum Yield Amino Acid Carbon Quantum Dots with Unparalleled Refractive Index" - Read Article >>
  • "Preventing biofilm formation and eradicating pathogenic bacteria by Zn doped histidine derived carbon quantum dots" - Read Article >>
  • "Targeting phenylalanine assemblies as a prospective disease-modifying therapy for phenylketonuria" - Read Article >>
  • "Minimalistic Peptide Assemblies for Sustainable Optoelectronics" - Read Article >>
  • "Piezoelectric Self-assembling Peptides for Engineering Applications" - Read Article >>
  • "Co-Assembly of Cancer Drugs with Cyclo-HH Peptides: Insights from Simulations and Experiments" - Read Article >>
  • "Ordered planar plating/stripping enables deep cycling zinc metal batteries" -
    Read Article >>
  • "Mind your marker: the effect of common auxotrophic markers on complex traits in yeast" - Read Article >>
  • "Aromatic short peptide architectonics: Assembly and engineering" - Read Article >>
Prof. Martin Kupiec
  • "TORC2 is required for the accumulation of γH2A in response to DNA damage" - 
    Read Article >> 
  • "PCNA Unloading Is Crucial for the Bypass of DNA Lesions Using Homologous Recombination" - 
    Read Article >> 
Prof. Dan Peer
  • "Endosomal escape: A bottleneck for LNP-mediated therapeutics" - Read Article >>
  • "The immunostimulatory nature of mRNA lipid nanoparticles" - Read Article >> 
  • "Unlocking the therapeutic potential of locked nucleic acids through lipid nanoparticle delivery" - Read Article >>
  • "Delivery of nucleic acid based genome editing platforms via lipid nanoparticles: Clinical applications" - Read Article >> 
  • "The future of genetic medicines delivered via targeted lipid nanoparticles to leukocytes" - Read Article >>
  • "Current Progress in the Development of mRNA Vaccines Against Bacterial Infections" - Read Article >>
  • "Delivery of genetic medicines for muscular dystrophies" - Read Article >>
Prof. Tal Pupko

  • "Phylogenetic Analysis of 590 Species Reveals Distinct Evolutionary Patterns of Intron–Exon Gene Structures Across Eukaryotic Lineages" - Read Article >>

  • "Evolutionary Insights from the Mitochondrial Genome of Oikopleura dioica: Sequencing Challenges, RNA Editing, Gene Transfers to the Nucleus, and tRNA Loss" - Read Article >>

  • "Insertions and Deletions: Computational Methods, Evolutionary Dynamics, and Biological Applications" - Read Article >> 
  • "The Tree Reconstruction Game: Phylogenetic Reconstruction Using Reinforcement Learning" - Read Article >> 

  • "A machine-learning-based alternative to phylogenetic bootstrap" -  Read Article >>
  • "Effect of tokenization on transformers for biological sequences" - Read Article >>
  • "Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas" - Read Article >>
  • "Evolution of myxozoan mitochondrial genomes: insights from myxobolids" - Read Article >>
  • "Statistical framework to determine indel-length distribution" -  Read Article >>
Dr. Aldema Sas-Chen
  • "High-throughput detection of RNA modifications at single base resolution" - Read Article >>
Prof. Gil Segal
  • "The LysR-type transcriptional regulator LelA co-regulates various effectors in different Legionella species" - Read Article >>
  • "Genetic evidence for a regulated cysteine protease catalytic triad in LegA7, a Legionella pneumophila protein that impinges on a stress response pathway" - Read Article >>
Prof. Adi Stern
  • "Using big sequencing data to identify chronic SARS-Coronavirus-2 infections" - 
    Read Article >>

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